I've partitioned my HDD into 4 parts - C, D, E, H drives. Recently E drive got full. After that, its files and folders disappeared. I also have dual boot Ubuntu. I can see the files and folders on Ubuntu. I deleted around 6 GB using Ubuntu, but still, any files or folders are not showing up in Windows. I tried optimizing the disk but it didn't help. Please help. 
Answer
Showing Hidden and Protected System Files with File Explorer
From File Explorer, click the View tab. From the Options drop down select Change folder and search options. When the Folder Options window opens, select the View tab from there, and then check Show hidden files, folders, and drive, uncheck Hide empty drives, and uncheck Hide protected operating system files, press Apply, Ok and now check the "E" drive from File Explorer and you can do with them whatever you want at this point for your needs.
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