For the CPU cores, I think that blue means nice, green normal CPU use and red I/O. But I'm not sure and I haven't found a definite answer.
Then there are the colors for memory. What do green, blue and yellow mean there?
Answer
Press h inside htop for quick help.
CPU
Blue : Low-priority threads
Green : Normal priority threads
Red : Kernel threads
Turquoise : Virtualization threads
Memory
Green : Used memory
Blue : Buffers
Yellow/Orange : Cache
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